A list containing the following components:
data(toydata)A list with five components.
seu: A Seurat object, which is a subset of Xenium breast cancer section.
pos: A data frame containing the location information of spots. Each row corresponds to a spatial spot, with columns for x and y coordinates.
pathway_list: A list containing two pathways of intersecting. This list provides information about gene sets or pathways that are relevant to the dataset. Each element in the list is a character vector of gene names.
markers: A list of marker genes for each cell type. This list maps cell types to their respective marker genes, which can be used for cell type annotation.
imgf: A matrix containing histology image features. Each row corresponds to a spatial spot, and each column represents a different feature extracted from the histology image.