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The function IntegrateSpaData is used to integrate multiple SRT data based on the iSCMEBObj by iSC.MEB model fitting.

Usage

IntegrateSpaData(
  obj,
  species = c("human", "mouse", "unknown"),
  custom_housekeep = NULL
)

Arguments

obj

A iSCMEBObj object.

species

An optional string, one of 'Human', 'Mouse' and 'Unknown', specify the species of the SRT data to help choose the housekeeping genes. 'Unknown' means only using the PRECAST results reconstruct the alligned gene expression.

custom_housekeep

User-specified housekeeping genes.

See also