The function IntegrateSpaData is used to integrate multiple SRT data based on the iSCMEBObj by iSC.MEB model fitting.
Usage
IntegrateSpaData(
obj,
species = c("human", "mouse", "unknown"),
custom_housekeep = NULL
)Arguments
- obj
A iSCMEBObj object.
- species
An optional string, one of 'Human', 'Mouse' and 'Unknown', specify the species of the SRT data to help choose the housekeeping genes. 'Unknown' means only using the PRECAST results reconstruct the alligned gene expression.
- custom_housekeep
User-specified housekeeping genes.