Heatmap for spots-by-feature matrix

The function doHeatmap is used to plot heatmap for a Seurat object with expressioin data.

Usage

doHeatmap(
  seu,
  features = NULL,
  topn = 10,
  cell_label = "Domain",
  grp_label = FALSE,
  pt_size = 4,
  grp_color = NULL,
  ncol.legend = 1,
  ...
)

Arguments

seu: A Seurat object.
features: The features to be plotted.
topn: The number of features to be extracted when features is not provided. 10 by default.
cell_label: A string specify the name of legend. "Domain" by default.
grp_label: An indicator of whether display the group names. FALSE by default.
pt_size: The point size used in the plot. 4 by default.
grp_color: The colors to use for the group color bar. NULL by default.
ncol.legend: The number of columns of legend.
...: Arguments passed to other methods.

Usage

Arguments

See also